PH01005362G0030's details annotation
1.Annotation
ICBR annotation: transporter-related, putative, expressed
Blast result AT4G36790 : 4.00E-163
Blast annotation: Major facilitator superfamily protein
2.Location
Scaffold: PH01005362
Strand: +
| Region | Start | End |
| gene | 10593 | 15419 |
| mRNA | 10593 | 15419 |
| exon | 10593 | 10881 |
| exon | 11458 | 11612 |
| exon | 13228 | 13854 |
| exon | 14230 | 14405 |
| exon | 14508 | 15419 |
| CDS | 10759 | 10881 |
| CDS | 11458 | 11612 |
| CDS | 13228 | 13854 |
| CDS | 14230 | 14405 |
| CDS | 14508 | 15106 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000180 | transmembrane transport, integral to membrane, CAMK_AMPK (from iTAK) GH100 Glycoside_Hydrolases GH32 Glycoside_Hydrolases Golgi membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07690.15 | MFS_1 | 112 | 477 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.