Annotation of co-expression genes

PH01005386G0020's details annotation

1.Annotation

ICBR annotation: growth regulating factor protein, putative, expressed

Blast result AT2G22840 : 1.30E-35
Blast annotation: growth-regulating factor 1

2.Location

Scaffold: PH01005386
Strand: +

RegionStartEnd
gene59039192
mRNA59039192
exon59036718
exon71627347
exon78078122
exon84549192
CDS65446718
CDS71627347
CDS78078122
CDS84549012

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000026phosphatidylinositol_dephosphorylation
GRF Transcription_Regulator(from PlantTFDB)
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides,
RLK-Pelle_LRR-Xb-1 (from iTAK)
nucleus,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)GRF
Transcription_Regulator(from PlantTFDB)GRF

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08880.10QLQ78111
PF08879.9WRC137179

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0005524ATP binding
GO:0005634nucleus
GO:0006355regulation of transcription, DNA-dependent
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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