PH01005391G0020's details annotation
1.Annotation
ICBR annotation: translin, putative, expressed
Blast result AT2G37020 : 2.30E-43
Blast annotation: Translin family protein
2.Location
Scaffold: PH01005391
Strand: -
| Region | Start | End |
| gene | 2603 | 7304 |
| mRNA | 2603 | 7304 |
| exon | 2603 | 3156 |
| exon | 3313 | 3378 |
| exon | 3471 | 3522 |
| exon | 3973 | 4119 |
| exon | 4236 | 4316 |
| exon | 4952 | 5033 |
| exon | 5422 | 5466 |
| exon | 5566 | 5681 |
| exon | 5770 | 5866 |
| exon | 5975 | 7304 |
| CDS | 3070 | 3156 |
| CDS | 3313 | 3378 |
| CDS | 3471 | 3522 |
| CDS | 3973 | 4119 |
| CDS | 4236 | 4316 |
| CDS | 4952 | 5033 |
| CDS | 5422 | 5466 |
| CDS | 5566 | 5681 |
| CDS | 5770 | 5866 |
| CDS | 5975 | 6125 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001680 | COPII_vesicle_coating SET Transcription_Regulator(from iTAK) potassium_ion_transmembrane_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SET |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01997.15 | Translin | 19 | 138 |
| PF00856.27 | SET | 159 | 190 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.