PH01005423G0060's details annotation
1.Annotation
ICBR annotation: helix-loop-helix DNA-binding domain containing protein, expressed
Blast result AT2G42280 : 1.90E-44
Blast annotation: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
2.Location
Scaffold: PH01005423
Strand: -
| Region | Start | End |
| gene | 44268 | 50850 |
| mRNA | 44268 | 50850 |
| exon | 44268 | 44549 |
| exon | 44954 | 45022 |
| exon | 45150 | 45215 |
| exon | 45304 | 45450 |
| exon | 45610 | 45923 |
| exon | 46073 | 46343 |
| exon | 47149 | 47381 |
| exon | 47601 | 47609 |
| exon | 48348 | 48513 |
| exon | 49097 | 49200 |
| exon | 49315 | 49457 |
| exon | 50415 | 50850 |
| CDS | 44403 | 44549 |
| CDS | 44954 | 45022 |
| CDS | 45150 | 45215 |
| CDS | 45304 | 45450 |
| CDS | 45610 | 45923 |
| CDS | 46073 | 46343 |
| CDS | 47149 | 47381 |
| CDS | 47601 | 47609 |
| CDS | 48348 | 48513 |
| CDS | 49097 | 49200 |
| CDS | 49315 | 49457 |
| CDS | 50415 | 50542 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001545 | regulation of Rab GTPase activity, PLATZ Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bHLH |
| Transcription_Regulator(from PlantTFDB) | bHLH |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14291.5 | DUF4371 | 42 | 89 |
| PF14291.5 | DUF4371 | 90 | 129 |
| PF00010.25 | HLH | 501 | 546 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.