PH01005448G0030's details annotation
1.Annotation
ICBR annotation: glycosyl transferase family 8, putative, expressed
Blast result AT3G61130 : 0.00E+00
Blast annotation: galacturonosyltransferase 1
2.Location
Scaffold: PH01005448
Strand: -
| Region | Start | End |
| gene | 16476 | 22015 |
| mRNA | 16476 | 22015 |
| exon | 16476 | 17363 |
| exon | 17548 | 18135 |
| exon | 18214 | 18571 |
| exon | 18638 | 18972 |
| exon | 19081 | 19154 |
| exon | 19207 | 19414 |
| exon | 21183 | 22015 |
| CDS | 17088 | 17363 |
| CDS | 17548 | 18135 |
| CDS | 18214 | 18571 |
| CDS | 18638 | 18972 |
| CDS | 19081 | 19154 |
| CDS | 19207 | 19414 |
| CDS | 21183 | 21284 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01501.19 | Glyco_transf_8 | 304 | 619 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Starch and sucrose metabolism | alpha-1,4-galacturonosyltransferase [EC:2.4.1.43] | ko00500 | K13648 |
| Amino sugar and nucleotide sugar metabolism | alpha-1,4-galacturonosyltransferase [EC:2.4.1.43] | ko00520 | K13648 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016757 | transferase activity, transferring glycosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.