PH01005464G0050's details annotation
1.Annotation
ICBR annotation: glycine-rich protein, putative, expressed
Blast result AT4G32920 : 5.10E-84
Blast annotation: glycine-rich protein
2.Location
Scaffold: PH01005464
Strand: +
| Region | Start | End |
| gene | 27945 | 45375 |
| mRNA | 27945 | 45375 |
| exon | 27945 | 32331 |
| exon | 32986 | 33217 |
| exon | 34451 | 34492 |
| exon | 36365 | 36484 |
| exon | 39079 | 39207 |
| exon | 39288 | 39413 |
| exon | 40602 | 40657 |
| exon | 40774 | 40873 |
| exon | 41893 | 42276 |
| exon | 44064 | 44181 |
| exon | 44282 | 44491 |
| exon | 44808 | 45132 |
| exon | 45272 | 45375 |
| CDS | 31502 | 32331 |
| CDS | 32986 | 33217 |
| CDS | 34451 | 34492 |
| CDS | 36365 | 36484 |
| CDS | 39079 | 39207 |
| CDS | 39288 | 39413 |
| CDS | 40602 | 40657 |
| CDS | 40774 | 40873 |
| CDS | 41893 | 42276 |
| CDS | 44064 | 44181 |
| CDS | 44282 | 44491 |
| CDS | 44808 | 45132 |
| CDS | 45272 | 45335 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.