PH01005467G0050's details annotation
1.Annotation
ICBR annotation: peroxidase precursor, putative, expressed
Blast result AT2G38380 : 6.00E-91
Blast annotation: Peroxidase superfamily protein
2.Location
Scaffold: PH01005467
Strand: +
| Region | Start | End |
| gene | 49057 | 51685 |
| mRNA | 49057 | 51685 |
| exon | 49057 | 49363 |
| exon | 49448 | 49639 |
| exon | 50324 | 50489 |
| exon | 50581 | 51685 |
| CDS | 49145 | 49363 |
| CDS | 49448 | 49639 |
| CDS | 50324 | 50489 |
| CDS | 50581 | 51008 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00141.22 | peroxidase | 45 | 295 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Phenylalanine metabolism | peroxidase [EC:1.11.1.7] | ko00360 | K00430 |
| Phenylpropanoid biosynthesis | peroxidase [EC:1.11.1.7] | ko00940 | K00430 |
| Methane metabolism | peroxidase [EC:1.11.1.7] | ko00680 | K00430 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004601 | peroxidase activity |
| GO:0006979 | response to oxidative stress |
| GO:0020037 | heme binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.