Annotation of co-expression genes

PH01005560G0040's details annotation

1.Annotation

ICBR annotation: cyclic nucleotide-gated ion channel, putative, expressed

Blast result AT4G30560 : 4.00E-120
Blast annotation: cyclic nucleotide gated channel 9

2.Location

Scaffold: PH01005560
Strand: +

RegionStartEnd
gene1812224656
mRNA1812224656
exon1812218407
exon1884919431
exon2032520537
exon2150021622
exon2262822864
exon2295024656
CDS1834918407
CDS1884919431
CDS2032520537
CDS2150021622
CDS2262822864
CDS2295023627

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001057RLK-Pelle_URK-1 (from iTAK)
NEK (from iTAK)
chromatin silencing at telomere,
chromatin modification,
histone acetylation,
coexpression networkCFinderM001446RLK-Pelle_LRR-III (from iTAK)
membrane,
ion transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00520.30Ion_trans108312
PF00027.28cNMP_binding429517

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005216ion channel activity
GO:0006811ion transport
GO:0016020membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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