PH01005628G0020's details annotation
1.Annotation
ICBR annotation: pentatricopeptide repeat domain containing protein, putative, expressed
Blast result AT5G50390 : 1.00E-167
Blast annotation: Pentatricopeptide repeat (PPR-like) superfamily protein
2.Location
Scaffold: PH01005628
Strand: +
| Region | Start | End |
| gene | 8541 | 12121 |
| mRNA | 8541 | 12121 |
| exon | 8541 | 12121 |
| CDS | 9697 | 11730 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 169 | 194 |
| PF01535.19 | PPR | 244 | 264 |
| PF13041.5 | PPR_2 | 269 | 316 |
| PF13041.5 | PPR_2 | 370 | 416 |
| PF14432.5 | DYW_deaminase | 545 | 667 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.