Annotation of co-expression genes

PH01005698G0020's details annotation

1.Annotation

ICBR annotation: CAMK_KIN1/SNF1/Nim1_like.14 - CAMK includes calcium/calmodulin depedent protein kinases, expressed

Blast result AT5G57630 : 2.00E-108
Blast annotation: CBL-interacting protein kinase 21

2.Location

Scaffold: PH01005698
Strand: +

RegionStartEnd
gene2560128720
mRNA2560128720
exon2560126410
exon2650426566
exon2666126732
exon2683026937
exon2709227163
exon2727327326
exon2743327558
exon2764527734
exon2783327973
exon2807428181
exon2831928390
exon2848628720
CDS2624926410
CDS2650426566
CDS2666126732
CDS2683026937
CDS2709227163
CDS2727327326
CDS2743327558
CDS2764527734
CDS2783327973
CDS2807428181
CDS2831928390
CDS2848628566

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase10262
PF03822.13NAF310334

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0007165signal transduction
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.