PH01005704G0040's details annotation
1.Annotation
ICBR annotation: leaf senescence related protein, putative, expressed
Blast result AT2G40320 : 2.00E-141
Blast annotation: TRICHOME BIREFRINGENCE-LIKE 33
2.Location
Scaffold: PH01005704
Strand: +
| Region | Start | End |
| gene | 17613 | 21334 |
| mRNA | 17613 | 21334 |
| exon | 17613 | 18036 |
| exon | 18141 | 18373 |
| exon | 19566 | 19737 |
| exon | 19831 | 20030 |
| exon | 20113 | 20271 |
| exon | 20360 | 21334 |
| CDS | 17971 | 18036 |
| CDS | 18141 | 18373 |
| CDS | 19566 | 19737 |
| CDS | 19831 | 20030 |
| CDS | 20113 | 20271 |
| CDS | 20360 | 20714 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000552 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14416.5 | PMR5N | 44 | 96 |
| PF13839.5 | PC-Esterase | 98 | 382 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.