Annotation of co-expression genes

PH01005708G0140's details annotation

1.Annotation

ICBR annotation: disease resistance RPP13-like protein 1, putative, expressed

Blast result AT3G14470 : 4.80E-53
Blast annotation: NB-ARC domain-containing disease resistance protein

2.Location

Scaffold: PH01005708
Strand: -

RegionStartEnd
gene5177856124
mRNA5177856124
exon5177853087
exon5314354092
exon5457755605
exon5580056124
CDS5257553087
CDS5314354092
CDS5457755605
CDS5580056124

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000709ADP_binding
defense response,
RLK-Pelle_LRK10L-2 (from iTAK)
tryptophanyl-tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
tryptophan-tRNA ligase activity,
cullin-RING ubiquitin ligase complex,
regulation of ARF GTPase activity,
coexpression networkCFinderM000988ADP_binding
defense response,
tryptophanyl-tRNA aminoacylation,
tryptophan-tRNA ligase activity,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation for protein translation,
coexpression networkCFinderM000996ADP_binding
defense response,
tryptophanyl-tRNA aminoacylation,
tryptophan-tRNA ligase activity,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation for protein translation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00931.21NB-ARC110329

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0006952defense response
GO:0043531ADP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.