PH01005727G0030's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative, expressed
Blast result AT2G13600 : 4.00E-103
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01005727
Strand: -
| Region | Start | End |
| gene | 22384 | 26800 |
| mRNA | 22384 | 26800 |
| exon | 22384 | 24776 |
| exon | 25277 | 26800 |
| CDS | 22583 | 24776 |
| CDS | 25277 | 25743 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000489 | SAGA-type_complex cell death, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13812.5 | PPR_3 | 226 | 273 |
| PF01535.19 | PPR | 467 | 494 |
| PF01535.19 | PPR | 498 | 527 |
| PF01535.19 | PPR | 528 | 556 |
| PF13041.5 | PPR_2 | 558 | 605 |
| PF13041.5 | PPR_2 | 658 | 703 |
| PF01535.19 | PPR | 733 | 756 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.