PH01005763G0020's details annotation
1.Annotation
ICBR annotation: aldehyde dehydrogenase, putative, expressed
Blast result AT1G23800 : 0.00E+00
Blast annotation: aldehyde dehydrogenase 2B7
2.Location
Scaffold: PH01005763
Strand: +
| Region | Start | End |
| gene | 18645 | 22851 |
| mRNA | 18645 | 22851 |
| exon | 18645 | 18897 |
| exon | 19775 | 19927 |
| exon | 20052 | 20194 |
| exon | 20288 | 20761 |
| exon | 20832 | 21005 |
| exon | 21152 | 21289 |
| exon | 21535 | 21672 |
| exon | 21755 | 21816 |
| exon | 21873 | 22851 |
| CDS | 18798 | 18897 |
| CDS | 19775 | 19927 |
| CDS | 20052 | 20194 |
| CDS | 20288 | 20761 |
| CDS | 20832 | 21005 |
| CDS | 21152 | 21289 |
| CDS | 21535 | 21672 |
| CDS | 21755 | 21816 |
| CDS | 21873 | 22200 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000087 | AP2/ERF-RAV Transcription_Regulator(from iTAK) RAV Transcription_Regulator(from PlantTFDB) Valine,_leucine_and_isoleucine_degradation Chloroalkane_and_chloroalkene_degradation Lysine_degradation Tryptophan_metabolism Propanoate_metabolism beta-Alanine_metabolism Limonene_and_pinene_degradation Histidine_metabolism Pentose_and_glucuronate_interconversions Fatty_acid_metabolism Glycerolipid_metabolism Ascorbate_and_aldarate_metabolism antiporter activity, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, drug transmembrane transporter activity, |
| coexpression network | CFinderM000165 | oxidoreductase activity, acting on CH-OH group of donors, flavin adenine dinucleotide binding, oxidation-reduction process, vesicle docking involved in exocytosis, Valine,_leucine_and_isoleucine_degradation oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, Histidine_metabolism Limonene_and_pinene_degradation Propanoate_metabolism Tryptophan_metabolism Lysine_degradation Chloroalkane_and_chloroalkene_degradation beta-Alanine_metabolism Fatty_acid_metabolism Glycerolipid_metabolism Ascorbate_and_aldarate_metabolism Pentose_and_glucuronate_interconversions |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00171.21 | Aldedh | 79 | 462 |
| PF00171.21 | Aldedh | 477 | 559 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Lysine degradation | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00310 | K00128 |
| Arginine and proline metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00330 | K00128 |
| Histidine metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00340 | K00128 |
| Tryptophan metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00380 | K00128 |
| beta-Alanine metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00410 | K00128 |
| Limonene and pinene degradation | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00903 | K00128 |
| Chloroalkane and chloroalkene degradation | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00625 | K00128 |
| Glycolysis / Gluconeogenesis | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00010 | K00128 |
| Pentose and glucuronate interconversions | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00040 | K00128 |
| Ascorbate and aldarate metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00053 | K00128 |
| Pyruvate metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00620 | K00128 |
| Propanoate metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00640 | K00128 |
| Fatty acid metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko01212 | K00128 |
| Glycerolipid metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00561 | K00128 |
| 308 Valine, leucine and isoleucine degradation | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | K00128 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
| GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.