PH01005809G0030's details annotation
1.Annotation
ICBR annotation: formyl transferase, putative, expressed
Blast result AT1G31220 : 8.30E-80
Blast annotation: Formyl transferase
2.Location
Scaffold: PH01005809
Strand: +
| Region | Start | End |
| gene | 13275 | 16329 |
| mRNA | 13275 | 16329 |
| exon | 13275 | 14063 |
| exon | 14152 | 14263 |
| exon | 14907 | 15083 |
| exon | 15408 | 15584 |
| exon | 15858 | 15984 |
| exon | 16109 | 16329 |
| CDS | 13748 | 14063 |
| CDS | 14152 | 14263 |
| CDS | 14907 | 15083 |
| CDS | 15408 | 15584 |
| CDS | 15858 | 15984 |
| CDS | 16109 | 16222 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00551.18 | Formyl_trans_N | 68 | 203 |
| PF00551.18 | Formyl_trans_N | 202 | 312 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| One carbon pool by folate | phosphoribosylglycinamide formyltransferase [EC:2.1.2.2] | ko00670 | K00601 |
| Purine metabolism | phosphoribosylglycinamide formyltransferase [EC:2.1.2.2] | ko00230 | K00601 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008168 | methyltransferase activity |
| GO:0009058 | biosynthetic process |
| GO:0016742 | hydroxymethyl-, formyl- and related transferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.