PH01005823G0030's details annotation
1.Annotation
ICBR annotation: spotted leaf 11, putative, expressed
Blast result AT1G08315 : 3.30E-56
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01005823
Strand: +
| Region | Start | End |
| gene | 19507 | 21758 |
| mRNA | 19507 | 21758 |
| exon | 19507 | 20722 |
| exon | 20947 | 21758 |
| CDS | 20243 | 20722 |
| CDS | 20947 | 21477 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000258 | cellular protein modification process, protein neddylation, phosphopyruvate hydratase complex, NF-YB Transcription_Regulator(from PlantTFDB) PLATZ Transcription_Regulator(from iTAK) RLK-Pelle_LRR-VI-2 (from iTAK) |
| coexpression network | CFinderM000285 | ABC_transporters |
| coexpression network | CFinderM000836 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, cellular protein modification process, nitrogen compound metabolic process, response to stress, |
| coexpression network | CFinderM001412 | protein neddylation, PLATZ Transcription_Regulator(from iTAK) RLK-Pelle_LRR-VI-2 (from iTAK) cellular protein modification process, Ubiquitin_mediated_proteolysis RNA_degradation small protein activating enzyme activity, |
| coexpression network | CFinderM001538 | oligopeptide transport, transporter activity, |
| coexpression network | CFinderM001539 | protein methylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.