PH01005850G0060's details annotation
1.Annotation
ICBR annotation: mRNA-capping enzyme, putative, expressed
Blast result AT3G09100 : 2.00E-165
Blast annotation: mRNA capping enzyme family protein
2.Location
Scaffold: PH01005850
Strand: +
| Region | Start | End |
| gene | 32171 | 43250 |
| mRNA | 32171 | 43250 |
| exon | 32171 | 33882 |
| exon | 34456 | 34591 |
| exon | 34766 | 34917 |
| exon | 35138 | 35221 |
| exon | 35294 | 35356 |
| exon | 36371 | 36580 |
| exon | 36883 | 36996 |
| exon | 37822 | 37865 |
| exon | 38600 | 38762 |
| exon | 38845 | 38967 |
| exon | 39197 | 39325 |
| exon | 39414 | 39512 |
| exon | 40736 | 40825 |
| exon | 40934 | 41018 |
| exon | 41614 | 41684 |
| exon | 42210 | 42274 |
| exon | 42595 | 42676 |
| exon | 42881 | 43250 |
| CDS | 33766 | 33882 |
| CDS | 34456 | 34591 |
| CDS | 34766 | 34917 |
| CDS | 35138 | 35221 |
| CDS | 35294 | 35356 |
| CDS | 36371 | 36580 |
| CDS | 36883 | 36996 |
| CDS | 37822 | 37865 |
| CDS | 38600 | 38762 |
| CDS | 38845 | 38967 |
| CDS | 39197 | 39325 |
| CDS | 39414 | 39512 |
| CDS | 40736 | 40825 |
| CDS | 40934 | 41018 |
| CDS | 41614 | 41684 |
| CDS | 42210 | 42274 |
| CDS | 42595 | 42676 |
| CDS | 42881 | 43060 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001778 | GT16 GlycosylTransferases oligosaccharide biosynthetic process, Golgi stack, 7-methylguanosine mRNA capping, mRNA processing, alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, mRNA guanylyltransferase activity, N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01331.18 | mRNA_cap_enzyme | 308 | 496 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | mRNA-capping enzyme [EC:2.7.7.50;EC:3.1.3.33] | ko03015 | K13917 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004484 | mRNA guanylyltransferase activity |
| GO:0006370 | 7-methylguanosine mRNA capping |
| GO:0006397 | mRNA processing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.