PH01005867G0030's details annotation
1.Annotation
ICBR annotation: copine, putative, expressed
Blast result AT5G14420 : 1.50E-41
Blast annotation: RING domain ligase2
2.Location
Scaffold: PH01005867
Strand: +
| Region | Start | End |
| gene | 10565 | 12253 |
| mRNA | 10565 | 12253 |
| exon | 10565 | 10732 |
| exon | 11088 | 11193 |
| exon | 11267 | 11394 |
| exon | 11497 | 12253 |
| CDS | 10671 | 10732 |
| CDS | 11088 | 11193 |
| CDS | 11267 | 11394 |
| CDS | 11497 | 11707 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07002.15 | Copine | 17 | 99 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.