PH01005895G0010's details annotation
1.Annotation
ICBR annotation: phytosulfokine receptor precursor, putative, expressed
Blast result AT1G17240 : 2.00E-146
Blast annotation: receptor like protein 2
2.Location
Scaffold: PH01005895
Strand: -
| Region | Start | End |
| gene | 1956 | 7089 |
| mRNA | 1956 | 7089 |
| exon | 1956 | 2720 |
| exon | 3333 | 5319 |
| exon | 6395 | 7089 |
| CDS | 2500 | 2720 |
| CDS | 3333 | 5319 |
| CDS | 6395 | 6691 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001555 | protein retention in ER lumen, RLK-Pelle_DLSV (from iTAK) ER retention sequence binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 129 | 167 |
| PF00560.32 | LRR_1 | 368 | 389 |
| PF13855.5 | LRR_8 | 417 | 476 |
| PF13855.5 | LRR_8 | 541 | 600 |
| PF13855.5 | LRR_8 | 648 | 705 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.