PH01006040G0030's details annotation
1.Annotation
ICBR annotation: receptor-like protein kinase, putative, expressed
Blast result AT4G29990 : 1.00E-179
Blast annotation: Leucine-rich repeat transmembrane protein kinase protein
2.Location
Scaffold: PH01006040
Strand: -
| Region | Start | End |
| gene | 10128 | 15816 |
| mRNA | 10128 | 15816 |
| exon | 10128 | 11715 |
| exon | 11798 | 11990 |
| exon | 12080 | 12148 |
| exon | 12279 | 12405 |
| exon | 12497 | 12768 |
| exon | 12975 | 13030 |
| exon | 13114 | 13194 |
| exon | 13432 | 13503 |
| exon | 13595 | 13733 |
| exon | 13877 | 14157 |
| exon | 14436 | 14651 |
| exon | 14785 | 15337 |
| exon | 15587 | 15816 |
| CDS | 11250 | 11715 |
| CDS | 11798 | 11990 |
| CDS | 12080 | 12148 |
| CDS | 12279 | 12405 |
| CDS | 12497 | 12768 |
| CDS | 12975 | 13030 |
| CDS | 13114 | 13194 |
| CDS | 13432 | 13503 |
| CDS | 13595 | 13733 |
| CDS | 13877 | 14157 |
| CDS | 14436 | 14651 |
| CDS | 14785 | 15337 |
| CDS | 15587 | 15671 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
| coexpression network | CFinderM000556 | regulation of transcription, DNA-dependent, protein phosphorylation, |
| coexpression network | CFinderM000770 | protein phosphorylation, RLK-Pelle_LRR-I-1 (from iTAK) RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_WAK (from iTAK) |
| coexpression network | CFinderM000968 | protein phosphorylation, protein serine/threonine kinase activity, transferase activity, transferring phosphorus-containing groups, protein kinase activity, regulation of transcription, DNA-dependent, ATP binding, RLK-Pelle_LRR-I-1 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12819.6 | Malectin_like | 33 | 366 |
| PF07714.16 | Pkinase_Tyr | 543 | 812 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.