PH01006070G0050's details annotation
1.Annotation
ICBR annotation: copine, putative, expressed
Blast result AT1G08860 : 2.00E-130
Blast annotation: Calcium-dependent phospholipid-binding Copine family protein
2.Location
Scaffold: PH01006070
Strand: -
| Region | Start | End |
| gene | 36846 | 40924 |
| mRNA | 36846 | 40924 |
| exon | 36846 | 37098 |
| exon | 37189 | 37285 |
| exon | 37723 | 37836 |
| exon | 37903 | 38067 |
| exon | 39014 | 39151 |
| exon | 39226 | 39302 |
| exon | 39390 | 39501 |
| exon | 39584 | 39671 |
| exon | 39754 | 39815 |
| exon | 40027 | 40053 |
| exon | 40145 | 40924 |
| CDS | 36983 | 37098 |
| CDS | 37189 | 37285 |
| CDS | 37723 | 37836 |
| CDS | 37903 | 38067 |
| CDS | 39014 | 39151 |
| CDS | 39226 | 39302 |
| CDS | 39390 | 39501 |
| CDS | 39584 | 39671 |
| CDS | 39754 | 39815 |
| CDS | 40027 | 40053 |
| CDS | 40145 | 40243 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07002.15 | Copine | 140 | 356 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.