PH01006153G0020's details annotation
1.Annotation
ICBR annotation: inducer of CBF expression 1, putative, expressed
Blast result AT3G26744 : 9.00E-86
Blast annotation: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
2.Location
Scaffold: PH01006153
Strand: -
| Region | Start | End |
| gene | 11005 | 14552 |
| mRNA | 11005 | 14552 |
| exon | 11005 | 11634 |
| exon | 11748 | 11918 |
| exon | 12160 | 12387 |
| exon | 13362 | 14552 |
| CDS | 11551 | 11634 |
| CDS | 11748 | 11918 |
| CDS | 12160 | 12387 |
| CDS | 13362 | 14444 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000039 | bHLH Transcription_Regulator(from PlantTFDB) CBM22 Carbohydrate-Binding_Modules GH10 Glycoside_Hydrolases SBP Transcription_Regulator(from PlantTFDB) protein dimerization activity, negative regulation of catalytic activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bHLH |
| Transcription_Regulator(from PlantTFDB) | bHLH |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00010.25 | HLH | 335 | 378 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.