Annotation of co-expression genes

PH01006201G0060's details annotation

1.Annotation

ICBR annotation: ras-related protein, putative, expressed

Blast result AT4G17170 : 1.00E-103
Blast annotation: RAB GTPase homolog B1C

2.Location

Scaffold: PH01006201
Strand: +

RegionStartEnd
gene1858720418
mRNA1858720418
exon1858718851
exon1906519204
exon1947120418
CDS1880618851
CDS1906519204
CDS1947119503

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00071.21Ras8168

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003924GTPase activity
GO:0005525GTP binding
GO:0005622intracellular
GO:0006184GTP catabolic process
GO:0006886intracellular protein transport
GO:0006913nucleocytoplasmic transport
GO:0007165signal transduction
GO:0007264small GTPase mediated signal transduction
GO:0015031protein transport
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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