PH01006220G0080's details annotation
1.Annotation
ICBR annotation: miro, putative, expressed
Blast result AT3G03120 : 9.90E-39
Blast annotation: ADP-ribosylation factor B1C
2.Location
Scaffold: PH01006220
Strand: -
| Region | Start | End |
| gene | 35156 | 40780 |
| mRNA | 35156 | 40780 |
| exon | 35156 | 35900 |
| exon | 36215 | 36397 |
| exon | 36811 | 36879 |
| exon | 36962 | 37027 |
| exon | 37128 | 37187 |
| exon | 37561 | 37676 |
| exon | 37871 | 37898 |
| exon | 39503 | 40780 |
| CDS | 35814 | 35900 |
| CDS | 36215 | 36397 |
| CDS | 36811 | 36879 |
| CDS | 36962 | 37027 |
| CDS | 37128 | 37187 |
| CDS | 37561 | 37676 |
| CDS | 37871 | 37898 |
| CDS | 39503 | 39919 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00025.20 | Arf | 150 | 230 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
| GO:0005622 | intracellular |
| GO:0007264 | small GTPase mediated signal transduction |
| GO:0008289 | lipid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.