PH01006257G0020's details annotation
1.Annotation
ICBR annotation: methyladenine glycosylase, putative, expressed
Blast result AT5G57970 : 3.50E-53
Blast annotation: DNA glycosylase superfamily protein
2.Location
Scaffold: PH01006257
Strand: -
| Region | Start | End |
| gene | 11836 | 15707 |
| mRNA | 11836 | 15707 |
| exon | 11836 | 12218 |
| exon | 12345 | 12407 |
| exon | 12494 | 12635 |
| exon | 12724 | 12807 |
| exon | 12900 | 12957 |
| exon | 14070 | 15707 |
| CDS | 12036 | 12218 |
| CDS | 12345 | 12407 |
| CDS | 12494 | 12635 |
| CDS | 12724 | 12807 |
| CDS | 12900 | 12957 |
| CDS | 14070 | 14643 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03352.12 | Adenine_glyco | 190 | 308 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0006281 | DNA repair |
| GO:0006284 | base-excision repair |
| GO:0008725 | DNA-3-methyladenine glycosylase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.