PH01006272G0040's details annotation
1.Annotation
ICBR annotation: OsProCP5 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed
Blast result AT5G65760 : 9.00E-105
Blast annotation: Serine carboxypeptidase S28 family protein
2.Location
Scaffold: PH01006272
Strand: -
| Region | Start | End |
| gene | 21295 | 25979 |
| mRNA | 21295 | 25979 |
| exon | 21295 | 22119 |
| exon | 22769 | 22818 |
| exon | 22968 | 23047 |
| exon | 23229 | 23543 |
| exon | 23619 | 23742 |
| exon | 23863 | 23969 |
| exon | 24071 | 24204 |
| exon | 24793 | 24979 |
| exon | 25463 | 25979 |
| CDS | 21989 | 22119 |
| CDS | 22769 | 22818 |
| CDS | 22968 | 23047 |
| CDS | 23229 | 23543 |
| CDS | 23619 | 23742 |
| CDS | 23863 | 23969 |
| CDS | 24071 | 24204 |
| CDS | 24793 | 24979 |
| CDS | 25463 | 25846 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05577.11 | Peptidase_S28 | 129 | 482 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006508 | proteolysis |
| GO:0008236 | serine-type peptidase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.