Annotation of co-expression genes

PH01006279G0010's details annotation

1.Annotation

ICBR annotation: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

Blast result AT5G16000 : 0.00E+00
Blast annotation: NSP-interacting kinase 1

2.Location

Scaffold: PH01006279
Strand: -

RegionStartEnd
gene21566082
mRNA21566082
exon21562717
exon28123191
exon34903831
exon39274076
exon42694366
exon44644538
exon46084778
exon48084951
exon50595130
exon52355367
exon55426082
CDS23972717
CDS28123191
CDS34903831
CDS39274076
CDS42694366
CDS44644538
CDS46084778
CDS48084951
CDS50595130
CDS52355367
CDS55425647

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000855endoplasmic reticulum,
Phagosome
Protein_processing_in_endoplasmic_reticulum
protein folding,
unfolded protein binding,
RLK-Pelle_RLCK-IV (from iTAK)
RLK-Pelle_LRR-II (from iTAK)
calcium ion binding,
protein phosphorylation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08263.11LRRNT_23372
PF07714.16Pkinase_Tyr346612

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.