PH01006342G0060's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G23390 : 7.00E-107
Blast annotation: Plant protein of unknown function (DUF639)
2.Location
Scaffold: PH01006342
Strand: -
| Region | Start | End |
| gene | 35859 | 40239 |
| mRNA | 35859 | 40239 |
| exon | 35859 | 36192 |
| exon | 36730 | 36842 |
| exon | 37069 | 37714 |
| exon | 37901 | 38081 |
| exon | 38176 | 38318 |
| exon | 38453 | 38622 |
| exon | 38715 | 38801 |
| exon | 38987 | 39203 |
| exon | 39297 | 40239 |
| CDS | 35904 | 36192 |
| CDS | 36730 | 36842 |
| CDS | 37069 | 37714 |
| CDS | 37901 | 38081 |
| CDS | 38176 | 38318 |
| CDS | 38453 | 38622 |
| CDS | 38715 | 38801 |
| CDS | 38987 | 39203 |
| CDS | 39297 | 39454 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04842.11 | DUF639 | 496 | 571 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.