PH01006349G0050's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G47490 : 1.40E-62
Blast annotation: RGPR-related
2.Location
Scaffold: PH01006349
Strand: +
| Region | Start | End |
| gene | 29923 | 41561 |
| mRNA | 29923 | 41561 |
| exon | 29923 | 32139 |
| exon | 32344 | 32517 |
| exon | 32656 | 32973 |
| exon | 33157 | 33204 |
| exon | 34583 | 34906 |
| exon | 39841 | 39969 |
| exon | 40046 | 40207 |
| exon | 40284 | 40451 |
| exon | 40910 | 41561 |
| CDS | 31567 | 32139 |
| CDS | 32344 | 32517 |
| CDS | 32656 | 32973 |
| CDS | 33157 | 33204 |
| CDS | 34583 | 34906 |
| CDS | 39841 | 39969 |
| CDS | 40046 | 40207 |
| CDS | 40284 | 40451 |
| CDS | 40910 | 41167 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00481.20 | PP2C | 231 | 373 |
| PF12932.6 | Sec16 | 355 | 466 |
| PF12931.6 | Sec16_C | 528 | 616 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004722 | protein serine/threonine phosphatase activity |
| GO:0006470 | protein dephosphorylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.