PH01006362G0040's details annotation
1.Annotation
ICBR annotation: OTU-like cysteine protease family protein, putative, expressed
Blast result AT3G57810 : 1.90E-70
Blast annotation: Cysteine proteinases superfamily protein
2.Location
Scaffold: PH01006362
Strand: -
| Region | Start | End |
| gene | 28357 | 31857 |
| mRNA | 28357 | 31857 |
| exon | 28357 | 28614 |
| exon | 28884 | 29042 |
| exon | 29423 | 29521 |
| exon | 29628 | 29668 |
| exon | 29797 | 29918 |
| exon | 30016 | 31857 |
| CDS | 28527 | 28614 |
| CDS | 28884 | 29042 |
| CDS | 29423 | 29521 |
| CDS | 29628 | 29668 |
| CDS | 29797 | 29918 |
| CDS | 30016 | 30187 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000688 | GT64 GlycosylTransferases Alanine,_aspartate_and_glutamate_metabolism intrinsic to endoplasmic reticulum membrane, Nicotinate_and_nicotinamide_metabolism Terpenoid_backbone_biosynthesis regulation of ARF GTPase activity, isoprenoid biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02338.18 | OTU | 60 | 186 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.