PH01006391G0040's details annotation
1.Annotation
ICBR annotation: PPR repeat containing protein, expressed
Blast result AT1G19290 : 1.00E-168
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01006391
Strand: -
| Region | Start | End |
| gene | 22469 | 26797 |
| mRNA | 22469 | 26797 |
| exon | 22469 | 26797 |
| CDS | 22721 | 25021 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13041.5 | PPR_2 | 12 | 57 |
| PF13041.5 | PPR_2 | 79 | 127 |
| PF12854.6 | PPR_1 | 147 | 177 |
| PF13041.5 | PPR_2 | 185 | 233 |
| PF13041.5 | PPR_2 | 256 | 303 |
| PF13041.5 | PPR_2 | 324 | 373 |
| PF13041.5 | PPR_2 | 429 | 466 |
| PF01535.19 | PPR | 468 | 492 |
| PF13041.5 | PPR_2 | 529 | 573 |
| PF13041.5 | PPR_2 | 595 | 644 |
| PF12854.6 | PPR_1 | 662 | 693 |
| PF01535.19 | PPR | 707 | 732 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.