PH01006439G0010's details annotation
1.Annotation
ICBR annotation: FHA domain containing protein, putative, expressed
Blast result AT3G54350 : 2.60E-34
Blast annotation: Forkhead-associated (FHA) domain-containing protein
2.Location
Scaffold: PH01006439
Strand: +
| Region | Start | End |
| gene | 1731 | 6488 |
| mRNA | 1731 | 6488 |
| exon | 1731 | 3743 |
| exon | 3823 | 3880 |
| exon | 4010 | 4158 |
| exon | 4527 | 4613 |
| exon | 4970 | 5120 |
| exon | 6161 | 6488 |
| CDS | 1731 | 3743 |
| CDS | 3823 | 3880 |
| CDS | 4010 | 4158 |
| CDS | 4527 | 4613 |
| CDS | 4970 | 5120 |
| CDS | 6161 | 6282 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000810 | CAMTA Transcription_Regulator(from PlantTFDB) glycerol-3-phosphate dehydrogenase complex, Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM000814 | DDT Transcription_Regulator(from iTAK) Others Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13325.5 | MCRS_N | 11 | 54 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.