PH01006463G0020's details annotation
1.Annotation
ICBR annotation: NHL repeat-containing protein, putative, expressed
Blast result AT1G23890 : 6.40E-47
Blast annotation: NHL domain-containing protein
2.Location
Scaffold: PH01006463
Strand: +
| Region | Start | End |
| gene | 18157 | 22346 |
| mRNA | 18157 | 22346 |
| exon | 18157 | 18882 |
| exon | 18917 | 18993 |
| exon | 19418 | 19618 |
| exon | 20405 | 20499 |
| exon | 20583 | 22346 |
| CDS | 18590 | 18882 |
| CDS | 18917 | 18993 |
| CDS | 19418 | 19618 |
| CDS | 20405 | 20499 |
| CDS | 20583 | 21158 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001223 | chloroplast, C2C2-GATA Transcription_Regulator(from iTAK) GATA Transcription_Regulator(from PlantTFDB) Oxidative_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.