PH01006470G0010's details annotation
1.Annotation
ICBR annotation: SET domain containing protein, expressed
Blast result AT3G04380 : 7.00E-130
Blast annotation: SET-domain containing protein lysine methyltransferase family protein
2.Location
Scaffold: PH01006470
Strand: -
| Region | Start | End |
| gene | 7006 | 13822 |
| mRNA | 7006 | 13822 |
| exon | 7006 | 8454 |
| exon | 8548 | 8626 |
| exon | 9295 | 9345 |
| exon | 9459 | 9525 |
| exon | 9637 | 9902 |
| exon | 10037 | 11103 |
| exon | 11751 | 12327 |
| exon | 12550 | 13822 |
| CDS | 8408 | 8454 |
| CDS | 8548 | 8626 |
| CDS | 9295 | 9345 |
| CDS | 9459 | 9525 |
| CDS | 9637 | 9902 |
| CDS | 10037 | 11103 |
| CDS | 11751 | 12327 |
| CDS | 12550 | 12747 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SET |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10440.8 | WIYLD | 7 | 64 |
| PF05033.15 | Pre-SET | 455 | 603 |
| PF00856.27 | SET | 623 | 745 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
| GO:0008270 | zinc ion binding |
| GO:0018024 | histone-lysine N-methyltransferase activity |
| GO:0034968 | histone lysine methylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.