PH01006491G0010's details annotation
1.Annotation
ICBR annotation: Lg106, putative, expressed
Blast result AT5G64130 : 1.60E-28
Blast annotation: cAMP-regulated phosphoprotein 19-related protein
2.Location
Scaffold: PH01006491
Strand: +
| Region | Start | End |
| gene | 12987 | 15767 |
| mRNA | 12987 | 15767 |
| exon | 12987 | 13078 |
| exon | 14605 | 14742 |
| exon | 14834 | 14896 |
| exon | 15038 | 15085 |
| exon | 15169 | 15228 |
| exon | 15529 | 15767 |
| CDS | 13046 | 13078 |
| CDS | 14605 | 14742 |
| CDS | 14834 | 14896 |
| CDS | 15038 | 15085 |
| CDS | 15169 | 15228 |
| CDS | 15529 | 15639 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000794 | MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) RLK-Pelle_CR4L (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04667.16 | Endosulfine | 52 | 126 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.