PH01006616G0030's details annotation
1.Annotation
ICBR annotation: DHHC zinc finger domain containing protein, expressed
Blast result AT3G04970 : 9.40E-87
Blast annotation: DHHC-type zinc finger family protein
2.Location
Scaffold: PH01006616
Strand: +
| Region | Start | End |
| gene | 31063 | 35460 |
| mRNA | 31063 | 35460 |
| exon | 31063 | 31594 |
| exon | 31697 | 31790 |
| exon | 33154 | 33248 |
| exon | 33323 | 33490 |
| exon | 33778 | 33850 |
| exon | 33922 | 33974 |
| exon | 34838 | 35460 |
| CDS | 31446 | 31594 |
| CDS | 31697 | 31790 |
| CDS | 33154 | 33248 |
| CDS | 33323 | 33490 |
| CDS | 33778 | 33850 |
| CDS | 33922 | 33974 |
| CDS | 34838 | 34901 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000033 | galactonolactone_dehydrogenase_activity |
| coexpression network | CFinderM000047 | isomerase activity, Brassinosteroid_biosynthesis carbohydrate metabolic process, carbohydrate binding, |
| coexpression network | CFinderM000278 | TLK (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01529.19 | DHHC | 159 | 221 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.