PH01006649G0050's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT3G16010 : 0.00E+00
Blast annotation: Pentatricopeptide repeat (PPR-like) superfamily protein
2.Location
Scaffold: PH01006649
Strand: -
| Region | Start | End |
| gene | 9761 | 12432 |
| mRNA | 9761 | 12432 |
| exon | 9761 | 11635 |
| exon | 12264 | 12432 |
| CDS | 9819 | 11635 |
| CDS | 12264 | 12345 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 124 | 152 |
| PF01535.19 | PPR | 196 | 224 |
| PF12854.6 | PPR_1 | 226 | 257 |
| PF01535.19 | PPR | 267 | 293 |
| PF12854.6 | PPR_1 | 296 | 327 |
| PF12854.6 | PPR_1 | 329 | 361 |
| PF13041.5 | PPR_2 | 368 | 418 |
| PF01535.19 | PPR | 443 | 470 |
| PF12854.6 | PPR_1 | 478 | 502 |
| PF13041.5 | PPR_2 | 509 | 558 |
| PF13041.5 | PPR_2 | 579 | 625 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.