PH01006704G0040's details annotation
1.Annotation
ICBR annotation: TUDOR protein with multiple SNc domains, putative, expressed
Blast result AT5G07350 : 0.00E+00
Blast annotation: TUDOR-SN protein 1
2.Location
Scaffold: PH01006704
Strand: +
| Region | Start | End |
| gene | 10609 | 21006 |
| mRNA | 10609 | 21006 |
| exon | 10609 | 12171 |
| exon | 14013 | 14203 |
| exon | 14672 | 14836 |
| exon | 15180 | 15254 |
| exon | 15368 | 15481 |
| exon | 15566 | 15667 |
| exon | 15766 | 15972 |
| exon | 16042 | 16272 |
| exon | 16365 | 16472 |
| exon | 16604 | 16774 |
| exon | 16856 | 17053 |
| exon | 17160 | 17519 |
| exon | 17605 | 17835 |
| exon | 17910 | 18095 |
| exon | 18162 | 18239 |
| exon | 18330 | 18524 |
| exon | 19482 | 19859 |
| exon | 20509 | 21006 |
| CDS | 12108 | 12171 |
| CDS | 14013 | 14203 |
| CDS | 14672 | 14836 |
| CDS | 15180 | 15254 |
| CDS | 15368 | 15481 |
| CDS | 15566 | 15667 |
| CDS | 15766 | 15972 |
| CDS | 16042 | 16272 |
| CDS | 16365 | 16472 |
| CDS | 16604 | 16774 |
| CDS | 16856 | 17053 |
| CDS | 17160 | 17519 |
| CDS | 17605 | 17835 |
| CDS | 17910 | 18095 |
| CDS | 18162 | 18239 |
| CDS | 18330 | 18524 |
| CDS | 19482 | 19859 |
| CDS | 20509 | 20697 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00565.16 | SNase | 130 | 237 |
| PF00565.16 | SNase | 365 | 456 |
| PF00565.16 | SNase | 708 | 805 |
| PF00567.23 | TUDOR | 823 | 946 |
| PF00565.16 | SNase | 953 | 1058 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0016788 | hydrolase activity, acting on ester bonds |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.