PH01006716G0040's details annotation
1.Annotation
ICBR annotation: vacuolar protein sorting-associated protein 35, putative, expressed
Blast result AT2G17790 : 5.00E-133
Blast annotation: VPS35 homolog A
2.Location
Scaffold: PH01006716
Strand: -
| Region | Start | End |
| gene | 21644 | 32030 |
| mRNA | 21644 | 32030 |
| exon | 21644 | 21940 |
| exon | 22025 | 22114 |
| exon | 22260 | 22325 |
| exon | 22402 | 22641 |
| exon | 22949 | 23014 |
| exon | 23094 | 23333 |
| exon | 23499 | 23615 |
| exon | 23812 | 23928 |
| exon | 24251 | 24310 |
| exon | 24381 | 24455 |
| exon | 24931 | 24989 |
| exon | 25569 | 25816 |
| exon | 26165 | 26340 |
| exon | 26416 | 26505 |
| exon | 26587 | 26721 |
| exon | 26839 | 26926 |
| exon | 28572 | 28757 |
| exon | 31222 | 31348 |
| exon | 31440 | 31536 |
| exon | 31638 | 32030 |
| CDS | 21836 | 21940 |
| CDS | 22025 | 22114 |
| CDS | 22260 | 22325 |
| CDS | 22402 | 22641 |
| CDS | 22949 | 23014 |
| CDS | 23094 | 23333 |
| CDS | 23499 | 23615 |
| CDS | 23812 | 23928 |
| CDS | 24251 | 24310 |
| CDS | 24381 | 24455 |
| CDS | 24931 | 24989 |
| CDS | 25569 | 25816 |
| CDS | 26165 | 26340 |
| CDS | 26416 | 26505 |
| CDS | 26587 | 26721 |
| CDS | 26839 | 26926 |
| CDS | 28572 | 28757 |
| CDS | 31222 | 31348 |
| CDS | 31440 | 31536 |
| CDS | 31638 | 31733 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001672 | STE_STE11 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03635.16 | Vps35 | 13 | 314 |
| PF03635.16 | Vps35 | 435 | 520 |
| PF03635.16 | Vps35 | 519 | 657 |
| PF03635.16 | Vps35 | 662 | 798 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.