PH01006740G0010's details annotation
1.Annotation
ICBR annotation: RAD23 DNA repair protein, putative, expressed
Blast result AT5G38470 : 6.00E-117
Blast annotation: Rad23 UV excision repair protein family
2.Location
Scaffold: PH01006740
Strand: +
| Region | Start | End |
| gene | 14113 | 22041 |
| mRNA | 14113 | 22041 |
| exon | 14113 | 17780 |
| exon | 18926 | 19087 |
| exon | 19310 | 19360 |
| exon | 19834 | 19898 |
| exon | 20246 | 20311 |
| exon | 20451 | 20628 |
| exon | 20901 | 21050 |
| exon | 21122 | 21235 |
| exon | 21323 | 21432 |
| exon | 21517 | 21595 |
| exon | 21685 | 22041 |
| CDS | 17715 | 17780 |
| CDS | 18926 | 19087 |
| CDS | 19310 | 19360 |
| CDS | 19834 | 19898 |
| CDS | 20246 | 20311 |
| CDS | 20451 | 20628 |
| CDS | 20901 | 21050 |
| CDS | 21122 | 21235 |
| CDS | 21323 | 21432 |
| CDS | 21517 | 21595 |
| CDS | 21685 | 21822 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000093 | NAC Transcription_Regulator(from PlantTFDB) GH79 Glycoside_Hydrolases DBB Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000884 | Protein_processing_in_endoplasmic_reticulum GT48 GlycosylTransferases HB-other Transcription_Regulator(from PlantTFDB) HD-ZIP Transcription_Regulator(from PlantTFDB) Nucleotide_excision_repair proteasomal ubiquitin-dependent protein catabolic process, outer membrane-bounded periplasmic space, 1,3-beta-D-glucan synthase complex, (1->3)-beta-D-glucan biosynthetic process, nucleotide-excision repair, |
| coexpression network | CFinderM001040 | proteasomal ubiquitin-dependent protein catabolic process, nucleotide-excision repair, chloride transport, damaged DNA binding, ion channel activity, voltage-gated chloride channel activity, Nucleotide_excision_repair |
| coexpression network | CFinderM001388 | Protein_processing_in_endoplasmic_reticulum GT48 GlycosylTransferases Nucleotide_excision_repair outer membrane-bounded periplasmic space, 1,3-beta-D-glucan synthase complex, proteasomal ubiquitin-dependent protein catabolic process, (1->3)-beta-D-glucan biosynthetic process, nucleotide-excision repair, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) glycerol ether metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00240.22 | ubiquitin | 3 | 76 |
| PF00627.30 | UBA | 159 | 194 |
| PF09280.10 | XPC-binding | 260 | 315 |
| PF00627.30 | UBA | 340 | 376 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | UV excision repair protein RAD23 | ko04141 | K10839 |
| Nucleotide excision repair | UV excision repair protein RAD23 | ko03420 | K10839 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003684 | damaged DNA binding |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
| GO:0006289 | nucleotide-excision repair |
| GO:0043161 | proteasomal ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.