PH01006812G0030's details annotation
1.Annotation
ICBR annotation: HOTHEAD precursor, putative, expressed
Blast result AT1G72970 : 7.00E-126
Blast annotation: Glucose-methanol-choline (GMC) oxidoreductase family protein
2.Location
Scaffold: PH01006812
Strand: -
| Region | Start | End |
| gene | 22053 | 25075 |
| mRNA | 22053 | 25075 |
| exon | 22053 | 22230 |
| exon | 22321 | 22709 |
| exon | 22859 | 23172 |
| exon | 24584 | 25075 |
| CDS | 22132 | 22230 |
| CDS | 22321 | 22709 |
| CDS | 22859 | 23172 |
| CDS | 24584 | 24876 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000019 | oxidoreductase activity, acting on CH-OH group of donors, metabolic process, folic acid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00732.18 | GMC_oxred_N | 6 | 280 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.