PH01006822G0010's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G47490 : 0.00E+00
Blast annotation: RGPR-related
2.Location
Scaffold: PH01006822
Strand: -
| Region | Start | End |
| gene | 9085 | 18205 |
| mRNA | 9085 | 18205 |
| exon | 9085 | 10400 |
| exon | 10496 | 10791 |
| exon | 10899 | 11015 |
| exon | 11138 | 11464 |
| exon | 11618 | 11729 |
| exon | 11834 | 11961 |
| exon | 12187 | 12321 |
| exon | 13117 | 13242 |
| exon | 13600 | 13767 |
| exon | 13893 | 14015 |
| exon | 14093 | 14221 |
| exon | 15659 | 15979 |
| exon | 16078 | 18205 |
| CDS | 9854 | 10400 |
| CDS | 10496 | 10791 |
| CDS | 10899 | 11015 |
| CDS | 11138 | 11464 |
| CDS | 11618 | 11729 |
| CDS | 11834 | 11961 |
| CDS | 12187 | 12321 |
| CDS | 13117 | 13242 |
| CDS | 13600 | 13767 |
| CDS | 13893 | 14015 |
| CDS | 14093 | 14221 |
| CDS | 15659 | 15979 |
| CDS | 16078 | 17955 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12932.6 | Sec16 | 597 | 720 |
| PF12931.6 | Sec16_C | 782 | 1066 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0048208 | COPII vesicle coating |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.