PH01006917G0030's details annotation
1.Annotation
ICBR annotation: coatomer subunit beta-1, putative, expressed
Blast result AT4G31480 : 3.00E-36
Blast annotation: Coatomer, beta subunit
2.Location
Scaffold: PH01006917
Strand: -
| Region | Start | End |
| gene | 17278 | 18758 |
| mRNA | 17278 | 18758 |
| exon | 17278 | 17662 |
| exon | 18151 | 18758 |
| CDS | 17376 | 17662 |
| CDS | 18151 | 18505 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000136 | CPP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07718.11 | Coatamer_beta_C | 119 | 204 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005198 | structural molecule activity |
| GO:0005737 | cytoplasm |
| GO:0006886 | intracellular protein transport |
| GO:0016192 | vesicle-mediated transport |
| GO:0030126 | COPI vesicle coat |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.