PH01006918G0020's details annotation
1.Annotation
ICBR annotation: class I glutamine amidotransferase, putative, expressed
Blast result AT4G30550 : 8.60E-27
Blast annotation: Class I glutamine amidotransferase-like superfamily protein
2.Location
Scaffold: PH01006918
Strand: +
| Region | Start | End |
| gene | 17683 | 18818 |
| mRNA | 17683 | 18818 |
| exon | 17683 | 17876 |
| exon | 17967 | 18122 |
| exon | 18240 | 18407 |
| exon | 18545 | 18818 |
| CDS | 17745 | 17876 |
| CDS | 17967 | 18122 |
| CDS | 18240 | 18407 |
| CDS | 18545 | 18691 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000356 | glutaminyl-tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis glutamine-tRNA ligase activity, tRNA aminoacylation, C2H2 Transcription_Regulator(from PlantTFDB) ligase activity, forming aminoacyl-tRNA and related compounds, NAD+ ADP-ribosyltransferase activity, tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.