Annotation of co-expression genes

PH01006980G0020's details annotation

1.Annotation

ICBR annotation: respiratory burst oxidase, putative, expressed

Blast result AT1G09090 : 4.00E-179
Blast annotation: respiratory burst oxidase homolog B

2.Location

Scaffold: PH01006980
Strand: -

RegionStartEnd
gene1716321697
mRNA1716321697
exon1716317304
exon1752917621
exon1770118087
exon1831118745
exon1882018933
exon1902019068
exon1923019425
exon1950321697
CDS1718517304
CDS1752917621
CDS1770118087
CDS1831118745
CDS1882018933
CDS1902019068
CDS1923019425
CDS1950320052

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08414.9NADPH_Ox131228
PF01794.18Ferric_reduct404561
PF08022.11FAD_binding_8604646

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004601peroxidase activity
GO:0005509calcium ion binding
GO:0016491oxidoreductase activity
GO:0050664oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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