PH01007114G0040's details annotation
1.Annotation
ICBR annotation: NAD dependent epimerase/dehydratase family protein, putative, expressed
Blast result AT4G10960 : 7.00E-103
Blast annotation: UDP-D-glucose/UDP-D-galactose 4-epimerase 5
2.Location
Scaffold: PH01007114
Strand: +
| Region | Start | End |
| gene | 20964 | 26659 |
| mRNA | 20964 | 26659 |
| exon | 20964 | 21105 |
| exon | 22028 | 22129 |
| exon | 22210 | 22437 |
| exon | 23470 | 23554 |
| exon | 23854 | 23936 |
| exon | 26079 | 26170 |
| exon | 26254 | 26659 |
| CDS | 21034 | 21105 |
| CDS | 22028 | 22129 |
| CDS | 22210 | 22437 |
| CDS | 23470 | 23554 |
| CDS | 23854 | 23936 |
| CDS | 26079 | 26170 |
| CDS | 26254 | 26365 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000801 | arsenite_transport arsenite transmembrane transporter activity, galactose metabolic process, G2-like Transcription_Regulator(from PlantTFDB) GARP-G2-like Transcription_Regulator(from iTAK) UDP-glucose 4-epimerase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16363.4 | GDP_Man_Dehyd | 23 | 232 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0003978 | UDP-glucose 4-epimerase activity |
| GO:0006012 | galactose metabolic process |
| GO:0044237 | cellular metabolic process |
| GO:0050662 | coenzyme binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.