PH01007228G0020's details annotation
1.Annotation
ICBR annotation: histone deacetylase 19, putative, expressed
Blast result AT4G38130 : 0.00E+00
Blast annotation: histone deacetylase 1
2.Location
Scaffold: PH01007228
Strand: +
| Region | Start | End |
| gene | 9444 | 15686 |
| mRNA | 9444 | 15686 |
| exon | 9444 | 11204 |
| exon | 11298 | 11738 |
| exon | 13628 | 13858 |
| exon | 15085 | 15176 |
| exon | 15278 | 15341 |
| exon | 15661 | 15686 |
| CDS | 10665 | 11204 |
| CDS | 11298 | 11738 |
| CDS | 13628 | 13858 |
| CDS | 15085 | 15176 |
| CDS | 15278 | 15341 |
| CDS | 15661 | 15672 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00850.18 | Hist_deacetyl | 41 | 328 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004407 | histone deacetylase activity |
| GO:0016575 | histone deacetylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.