PH01007246G0020's details annotation
1.Annotation
ICBR annotation: leaf senescence related protein, putative, expressed
Blast result AT3G55990 : 2.10E-97
Blast annotation: Plant protein of unknown function (DUF828)
2.Location
Scaffold: PH01007246
Strand: +
| Region | Start | End |
| gene | 5064 | 11161 |
| mRNA | 5064 | 11161 |
| exon | 5064 | 5824 |
| exon | 5860 | 5976 |
| exon | 6413 | 6687 |
| exon | 8650 | 8821 |
| exon | 9230 | 9309 |
| exon | 9450 | 9611 |
| exon | 9949 | 10208 |
| exon | 10363 | 10461 |
| exon | 11076 | 11161 |
| CDS | 5783 | 5824 |
| CDS | 5860 | 5976 |
| CDS | 6413 | 6687 |
| CDS | 8650 | 8821 |
| CDS | 9230 | 9309 |
| CDS | 9450 | 9611 |
| CDS | 9949 | 10208 |
| CDS | 10363 | 10461 |
| CDS | 11076 | 11143 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14416.5 | PMR5N | 89 | 142 |
| PF13839.5 | PC-Esterase | 143 | 200 |
| PF13839.5 | PC-Esterase | 207 | 361 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.