PH01007294G0010's details annotation
1.Annotation
ICBR annotation: SNF7 domain containing protein, putative, expressed
Blast result AT5G63880 : 4.90E-57
Blast annotation: SNF7 family protein
2.Location
Scaffold: PH01007294
Strand: -
| Region | Start | End |
| gene | 103 | 2714 |
| mRNA | 103 | 2714 |
| exon | 103 | 1126 |
| exon | 1353 | 1505 |
| exon | 1670 | 1822 |
| exon | 2613 | 2714 |
| CDS | 1004 | 1126 |
| CDS | 1353 | 1505 |
| CDS | 1670 | 1822 |
| CDS | 2613 | 2714 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000290 | autophagy, Valine,_leucine_and_isoleucine_degradation Endocytosis |
| coexpression network | CFinderM000394 | Endocytosis Alanine,_aspartate_and_glutamate_metabolism IMP biosynthetic process, purine ribonucleotide biosynthetic process, phosphatidylcholine metabolic process, RLK-Pelle_RLCK-VI (from iTAK) Ether_lipid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03357.20 | Snf7 | 17 | 136 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Endocytosis | charged multivesicular body protein 6 | ko04144 | K12195 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015031 | protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.