PH01007365G0010's details annotation
1.Annotation
ICBR annotation: NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed
Blast result AT2G13560 : 1.60E-45
Blast annotation: NAD-dependent malic enzyme 1
2.Location
Scaffold: PH01007365
Strand: -
| Region | Start | End |
| gene | 3227 | 16850 |
| mRNA | 3227 | 16850 |
| exon | 3227 | 5260 |
| exon | 5995 | 6127 |
| exon | 6350 | 6464 |
| exon | 6694 | 6765 |
| exon | 6855 | 6909 |
| exon | 7139 | 7225 |
| exon | 7304 | 7376 |
| exon | 13512 | 13595 |
| exon | 13689 | 13792 |
| exon | 14421 | 14577 |
| exon | 16693 | 16850 |
| CDS | 4815 | 5260 |
| CDS | 5995 | 6127 |
| CDS | 6350 | 6464 |
| CDS | 6694 | 6765 |
| CDS | 6855 | 6909 |
| CDS | 7139 | 7225 |
| CDS | 7304 | 7376 |
| CDS | 13512 | 13595 |
| CDS | 13689 | 13792 |
| CDS | 14421 | 14577 |
| CDS | 16693 | 16767 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001161 | malic enzyme activity, malate_dehydrogenase_(decarboxylating)_(NAD+)_activity malate metabolic process, |
| coexpression network | CFinderM001302 | membrane coat, malic enzyme activity, malate_dehydrogenase_(decarboxylating)_(NAD+)_activity malate metabolic process, |
| coexpression network | CFinderM001453 | malic enzyme activity, malate_dehydrogenase_(decarboxylating)_(NAD+)_activity malate metabolic process, NAD binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, |
| coexpression network | CFinderM001596 | mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), malic enzyme activity, malate_dehydrogenase_(decarboxylating)_(NAD+)_activity ATP_catabolic_process ATP biosynthetic process, ATP metabolic process, malate metabolic process, proton transport, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00390.18 | malic | 79 | 129 |
| PF03949.14 | Malic_M | 140 | 244 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004470 | malic enzyme activity |
| GO:0006108 | malate metabolic process |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| GO:0016619 | malate dehydrogenase (oxaloacetate-decarboxylating) activity |
| GO:0051287 | NAD binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.